2024. 11. 27. 00:43ㆍComputational biology
Key packages and functions
Gene expression analysis:
DESeq2: Differential expression analysis of RNA-Seq data.
EdgeR: Differential gene expression analysis.
Gene sequencing:
Biostrings: manipulation and analysis of DNA, RNA, and protein sequence data.
ShortRead: Next Generation Sequencing (NGS) Data Analysis.
Functional interpretation:
ClusterProfiler: Gene Ontology (GO) and Pathway Analysis.
TopGO: Analysis of overrepresentation of gene ontology (GO) items.
Protein interaction network:
STRINGdb: Visualization and analysis of protein interaction networks.
igraph: Network analysis and visualization.
Data visualization:
ggplot2: A powerful tool for data visualization.
ComplexHeatmap: Creating a complex heat map.
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